MatthewJOberleyMDPhD

PubMed

• Not all uterine carcinosarcomas are created equal: Survival outcomes according to molecular characterization of uterine carcinosarcoma.
  Michael D Toboni, Kaitlyn Dinkins, Sharon Wu, Tyler Mattox, Matthew J Oberley
  Gynecologic Oncology. 2025-01-20
• Loss of O6-Methylguanine-DNA Methyltransferase Protein Expression by Immunohistochemistry Is Associated With Response to Capecitabine and Temozolomide in Neuroendocrin...
  Mark G Evans, Joanne Xiu, Sourat Darabi, Anthony Crymes, Adam Bedeir
  World Journal of Surgery. 2025-01-17
• Comprehensive analysis of targetable mutations and tumor microenvironment in urachal cancer.
  David J Benjamin, Tolulope T Adeyelu, Andrew Elliott, Sourat Darabi, Thomas Lee
  NPJ Precision Oncology. 2025-01-11

Journal Articles

• Congenital B-lymphoblastic leukemia with a cryptic MLL rearrangement and post-treatment evolution to mixed phenotype acute leukemia  
  Moschiano E, Raca G, Fu C, Pattengale PK, Oberley MJ, Leuk Res Rep, 1/1/2016
• Lymphoproliferative disorder with Auer rod-like inclusions  
  Oberley MJ, Yang DT, Blood, 1/1/2014
• Vav1 in hematologic neoplasms, a mini review  
  Oberley MJ, Wang D, and Yang D, American Journal of Blood Research, 1/1/2012
• A comprehensive ChIP-chip analysis of E2F1, E2F4, and E2F6 in normal and tumor cells reveals interchangeable roles of E2F family members  
  Xu X, Bieda M, Jin VX, Rabinovich A, Oberley MJ, Green R, and Farnham PJ, Genome Research, 1/1/2007
• The ENCODE (ENCylopedia Of DNA Elements) Project  
  The ENCODE Project Consortium, Science, 1/1/2004
• E2F6 negatively regulates BRCA1 in human cancer cells without methylation of histone H3 on lysine 9  
  Oberley MJ, Inman D, and Farnham PJ, Journal of Biological Chemistry, 1/1/2003
• Isolating human transcription factor targets by coupling chromatin immunoprecipitation and CpG island microarray analysis  
  Weinmann AS, Yan PS, Oberley MJ, Huang TH, and Farnham PJ, Genes and Development, 1/1/2002
• Polymorphic electrophile response elements in the mouse glutathione S-transferase GSTa1 gene that confer increased induction  
  Zhu M, Chapman WG, Oberley MJ, Wasserman WW, and Fahl WE, Cancer Letters, 1/1/2001
• Immunogold analysis of antioxidant enzymes in human renal cell carcinoma  
  Oberley TD, Sempf JM, Oberley MJ, McCormick ML, Muse KE, Oberley LW, Virchows Archive, 1/1/1994
• The ENCODE (ENCylopedia Of DNA Elements) Project.  
  The ENCODE Project Consortium, Science. 306: 636-640
• E2F6.  
  Oberley MJ, Atlas Genet Cytogenet Oncol Haematol
• High-throughput analysis of chromatin immunoprecipitates.  
  Oberley MJ, Tsao J, Yau P, and Farnham PJ, Meth. Enzymol. 376: 315-324
• Immunogold analysis of antioxidant enzymes in human renal cell carcinoma.  
  Oberley TD, Sempf JM, Oberley MJ, McCormick ML, Muse KE, Oberley LW, Virchows Archive. 424:155-64
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Books/Book Chapters

• Microarrays and Transcription Networks 
  Chapter: Identification of mammalian E2F regulatory networks using DNA microarray hybridization analyses. 
  Oberley MJ, and Farnham PJEditors: Shannon, M.F, and Rao, S..Landes Bioscience/Eurekah.com, Georgetown, DCEdition 1st,2006
• Promoter and CpG Island Microarrays 
  Chapter: The use of chromatin immunoprecipitation and RNA interference to study mechanisms of transcription with CpG island microarrays. 
  Oberley MJ, Kirmizis A, and Farnham PJEditors: Winegarden, N.A. and Takashi, M..DNAPress, Glendale, CAEdition 1st,2006
• Methods in Enzymology 
  Chapter: High-throughput analysis of chromatin immunoprecipitates. 
  Page 315 - 324Oberley MJ, Tsao J, Yau P, and Farnham PJ2004
• Methods in Enzymology 
  Chapter: Probing chromatin immunoprecipitates with CpG island microarrays to identify genomic sites occupied by DNA-binding proteins. 
  Page 371 - 579Oberley MJ and Farnham PJ2003
• Microarrays and Transcription Networks. 
  Chapter: Identification of mammalian E2F regulatory networks using DNA microarray hybridization analyses 
  Oberley MJ, and Farnham PJEditors: Shannon, M.F, and Rao, S.Landes Bioscience/Eurekah.com, Georgetown
• Promoter and CpG Island Microarrays. 
  Chapter: The use of chromatin immunoprecipitation and RNA interference to study mechanisms of transcription with CpG island microarrays 
  Oberley MJ, Kirmizis A, and Farnham PJEditors: Winegarden, N.A. and Takashi, M.DNAPress
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Abstracts/Posters

• Predictive Value of Minimal Residual Disease in WHO2016­Defined Mixed Phenotype Acute Leukemia (MPAL).
  Orgel E, Oberley MJ, Li S, Malvar J, and O'Gorman MRG, ASH 58th Annual Meeting, San Diego, CA, 1/1/2016
• Identification of Novel and Recurrent Copy Number Alterations in Pediatric High Grade B-cell Lymphoma by Chromosomal Microarray.
  Hagiya A, Raca G, and Oberley MJ, USC Depatment of Pathology Research Retreat, Long Beach, CA, 1/1/2016
• A comprehensive gene panel for precise diagnosis and treatment of childhood cancer.
  Triche TJ, Biegel J, Judkins A, Busse T, Wayne A, Bhojwani D, Asgharzadeh S, Oberley MJ, Parham D, AACR, New Orleans, LA, 1/1/2016
• Non-fatal systemic EBV+ T-cell LPD of childhood.
  Oberley MJ and Pattengale P, 2015 SH-EAHP Immunodeficiency Workshop, Long Beach, CA, 1/29/2015
• Is B-ALL with MPO positivity by flow cytometry alone sufficient for a diagnosis of mixed phenotype acute leukemia (and who is looking)?
  Oberley MJ, Li S, Brakensiek K, Sun B, and O'Gorman MRG, ICCS, Denver, CO, 1/1/2015
• Megakaryocytes support viability proliferation and protection of primary pre-B ALL cells from chemotherapy.
  Shishido SN, Gang EJ, Kim H, Xu R, Duchartre Y, Mittelman S, Oberley MJ, Abdel-Azim H, Heisterkamp N, and Kim Y-M, ASH, 1/1/2015
• Erythroid Gene Expression in Diamond-Blackfan Anemia.
  Lee C, Moschiano E., Pattengale P, Oberley MJ, USCAP, Boston, MA, 1/1/2015
• Babesia microti Infection in Renal Transplant Recipients.
  Brennan MB, Klein CL, Thompson DM, Kazmierczak JJ, He R, Leith C, Oberley MJ, Wolf MD, Wilkins PP, Herwaldt BL, Gauthier GM, Society for Healthcare Epidemiology of America (SHEA) Fifth Decennial International Conference on Healthcare-Associated Infections, 1/18/2010
• Optimizing Strategies for Cost Effective Diagnosis of Lymphoproliferative Disorders in Blood by Flow Cytometry.
  Matthew Oberley, Sean Fitzgerald, Joyce Johnson, Catherine Leith, American Society for Clinical Pathology Annual Meeting, Boston, Mass
• Babesia microti Infection in Renal Transplant Recipients.
  Meghan B. Brennan, Christina L Klein, Debra M. Thompson, James J. 4 Kazmierczak, Rong He, Catherine Leith, Matthew Oberley, Mitchell D Wolf, Patricia P. Wilkins, B..., Society for Healthcare Epidemiology of America (SHEA) Fifth Decennial International Conference
• Mapping Chromatin Structure with ChIP-chip experiments.
  Roland Green, Matthew Oberley, Michael Singer, Peggy Farnham, American Society for Human Genetics Annual Meeting, Toronto, Canada
• Discovery of Binding Sites for Transcription Factors Using Oligonucleotide Microarrays.
  Matthew Oberley, Jason Norton, Mike Singer, Todd Richmond, Peggy Farnham, and Roland Green, American Society for Cell Biology (ASCB) Annual Meeting, San Francisco, CA
• Use of RNA interference to validate E2F targets identified by ChIP-chip.
  Matthew Oberley and Peggy Farnham, Wisconsin Symposium III: From DNA to Molecular Medicine, Madison, WI
• E2F6 plays a role in gene silencing in cancer cells.
  Matthew Oberley and Peggy Farnham, Enzymology of Chromatin Meeting, Sante Fe, NM
• Novel E2F target promoters that lack consensus E2F binding sites.
  Matthew Oberley, Amy Weinman, Stephanie Bartley, and Peggy Farnham, American Association for Cancer Research Annual Meeting, San Francisco, CA
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Lectures

• Large B-Cell Lymphomas in Pediatric and Young Adults Display Clinically Relevant Molecular Features Distinguishable from Adult Counterparts 
  2018 ASH Annual Meeting - San Diego, CA - 12/1/2018
• Predictive Value of Minimal Residual Disease in WHO2016-Defined Mixed Phenotype Acute Leukemia 
  University of Wisconsin-Madison - 1/23/2017
• Clinical Significance of Isolated Myeloperoxidase Expression in B Lymphoblastic Leukemia. 
  Atlanta, GA - 1/16/2016
• 3. Immunohistochemical Evaluation of MYC Expression in Mantle Cell Lymphoma Improves the Prediction of Disease Outcome. 
  Childrens Hospital of Los Angeles, Los Angeles, CA - 1/13/2014
• Immunohistochemical evaluation of MYC expression in mantle cell lymphoma. 
  University of Wisconsin-Madison - 1/21/2013
• 4. In vivo examination of chromatin structure using chromatin immuno-precipitation and oligonucleotide arrays. 
  Portland, OR - 1/2/2004
• E2F and Rb-family activation of target genes: is each protein-DNA complex functional? 
  University of Wisconsin-Madison - 1/27/2000
• In vivo examination of chromatin structure using chromatin immunoprecipitation and oligonucleotide arrays. 
  Association of Biomolecular Resource Facilities (ABRF) Meeting. Portland, OR
• Localization of human E2F binding and associated histone post-translational modifications in vivo using chromatin immunoprecipitation and oligonucleotide microarrays. 
  Chromatin Meeting 2004. Luxembourg City, Luxembourg
• Development of a high-throughput microarray based assay to analyze mechanisms of E2F6-mediated transcriptional regulation. 
  UW-Madison Molecular and Environmental Toxicology Seminar Series
• Identification of E2F6 Targets with ChIP-chips and target validation of functional binding. 
  UW-Madison Cancer Biology Seminar Series
• Functional E2F recruitment to promoters lacking consensus-binding sites. 
  UW-Madison Cancer Biology Seminar Series
• E2F and Rb-family activation of target genes: is each protein–DNA complex functional? 
  UW-Madison Cancer Biology Seminar Series
• The application of transgenic mice towards the study of toxicological problems. 
  UW-Madison Molecular and Environmental Toxicology Seminar Series
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