JonathanH.ChenMD

PubMed

• 1 citations
  Large language model uncertainty proxies: discrimination and calibration for medical diagnosis and treatment.
  Thomas Savage, John Wang, Robert Gallo, Abdessalem Boukil, Vishwesh Patel
  Journal of the American Medical Informatics Association. 2025-01-01
• Socioeconomic Disparities and the Prevalence of Antimicrobial Resistance.
  Lauren N Cooper, Alaina M Beauchamp, Tanvi A Ingle, Marlon I Diaz, Abdi D Wakene
  Clinical Infectious Diseases. 2024-12-17
• Predictability of buprenorphine-naloxone treatment retention: A multi-site analysis combining electronic health records and machine learning.
  Fateme Nateghi Haredasht, Sajjad Fouladvand, Steven Tate, Min Min Chan, Joannas Jie Lin Yeow
  Addiction. 2024-10-01

Journal Articles

• Machine Learning and Prediction in Medicine - Beyond the Peak of Inflated Expectations  
  Chen, J.H., Asch, S.M., New England Journal of Medicine, 1/1/2017
• Decaying Relevance of Clinical Data Towards Future Decisions in Data-Driven Inpatient Clinical Order Sets  
  Chen, J.H., Alagappan, M., Goldstein, M.K., Asch, S.M., Altman, R.B, International Journal of Medical Informatics, 1/1/2017
• The training of next generation data scientists in biomedicine  
  Garmire, L.X., Gliske, S., Nguyen, Q.C., Chen, J.H., Nemati, S., Van Horn, J.D., Moore, J.H., Shreffler, C., Dunn, M, Pacific Symposium of Biocomputing, 1/1/2017
• Effect of Opioid Prescribing Guidelines in Primary Care  
  Chen, J.H., Hom, J., Richman, I., Asch, S.M., Podchiyska, T., Atwan Johansen, N, Medicine, 1/1/2016
• Predicting Inpatient Clinical Order Patterns with Probabilistic Topic Models vs Conventional Order Sets  
  Chen, J.H., Goldstein, M.K., Asch, S.M., Mackey, L., Altman, R.B, Journal of the American Medical Informatics Association, 1/1/2016
• Use of Opioid Agonist Therapy for Medicare Patients in 2013  
  Lembke, A., Chen, J.H., JAMA Psychiatry, 1/1/2016
• Fulfilling Outpatient Medicine Responsibilities During Internal Medicine Residency: A Quantitative Study of Housestaff Participation with Between Visist Tasks  
  Hom, J., Richman, I., Chen, J.H., Singh, B., Crump, C., Chi, J, BMC Med. Educ, 1/1/2016
• Patient Outcomes When Housestaff Exceed Eighty Hours per Week  
  Ouyang D, Chen JH, Krishnan G, Hom J, Witteles R, Chi J, Am. J. Med, 1/1/2016
• he Patient You Least Want to See (A Piece of My Mind)  
  Chen JH, JAMA, 1/1/2016
• Dynamically Evolving Clinical Practices and Implications for Predicting Medical Decisions  
  Chen JH, Goldstein MK, Asch SM, Mackey L, Altman RB, Pacific Symposium of Biocomputing, 1/1/2016
• Distribution of Opioids by Different Types of Medicare Prescribers  
  Chen JH, Humphreys K, Shah NM, Lembke A, JAMA Intern. Med, 1/1/2016
• Internal Medicine Resident Computer Usage: An Electronic Audit of an Inpatient Service  
  Ouyang D, Chen JH, Hom J, Chi J, JAMA Intern. Med, 1/1/2016
• Improving and sustaining a reduction in iatrogenic pneumothorax through a multi-faceted quality-improvement approach  
  Shieh L, Go M, Gessner D, Chen JH, Hopkins J, Maggio P, J. Hosp. Med, 1/1/2015
• OrderRex: clinical order decision support and outcome predictions by data-mining electronic medical records  
  Chen JH, Podchiyska T, Altman RB, J. Am. Med. Informatics Assoc, 1/1/2015
• Data-Mining Electronic Medical Records for Clinical Order Recommendations: Wisdom of the Crowd or Tyranny of the Mob?  
  Chen JH, Altman RB, AMIA Jt. Summits Transl. Sci. Proc. AMIA Summit Transl. Sci, 1/1/2015
• Development and Evaluation of an Electronic Medical Record-Based Best-Practice Discharge Checklist for Hospital Patients  
  Garg T, Lee JY, Evans KH, Chen J, Shieh L. Safety, Jt. Comm. J. Qual. Patient Saf, 1/1/2015
• Why providers transfuse blood products outside recommended guidelines in spite of integrated electronic best practice alerts  
  Chen JH, Fang DZ, Tim Goodnough L, Evans KH, Lee Porter M, Shieh L, J. Hosp. Med, 1/1/2015
• Automated physician order recommendations and outcome predictions by data-mining electronic medical records  
  Chen JH, Altman RB, AMIA Jt. Summits Transl. Sci. Proc. AMIA Summit Transl. Sci, 1/1/2014
• Mining for clinical expertise in (undocumented) order sets to power an order suggestion system  
  Chen JH, Altman RB, AMIA JT. Summits Transl. Sci. Proc. AMIA Summit Transl. Sci, 1/1/2013
• Learning to predict chemical reactions  
  Kayala MA, Azencott C-A, Chen JH, Baldi P, J. Chem. Inf. Model, 1/1/2011
• Reaction Explorer: Towards a Knowledge Map of Organic Chemistry To Support Dynamic Assessment and Personalized Instruction  
  Chen JH, Kayala MA, Baldi P, Enhancing Learning with Online Resources, Social Networking, and Digital Libraries., 1/1/2010
• No electron left behind: a rule-based expert system to predict chemical reactions and reaction mechanisms  
  Chen JH, Baldi P, J. Chem. Inf. Model, 1/1/2009
• Synthesis Explorer: A Chemical Reaction Tutorial System for Organic Synthesis Design and Mechanism Prediction  
  Chen JH, Baldi P, J. Chem. Educ, 1/1/2008
• Chem DB update - full-text search and virtual chemical space  
  Chen JH, Linstead E, Swamidass SJ, Wang D, Baldi P, Bioinformatics, 1/1/2007
• One- to four-dimensional kernels for virtual screening and the prediction of physical, chemical, and biological properties  
  Azencott C-A, Ksikes A, Swamidass SJ, Chen JH, Ralaivola L, Baldi P, J. Chem. Inf. Model, 1/1/2007
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Books/Book Chapters

• Guide to Big Data Applications 
  Chapter: The Impact of Big Data on the Physician 
  Le, E., Iyer, S., Patil, T., Li, R., Chen, J. H., Wang, M., & Sobel, E.Editors: S. Srinivasan.Springer, New York, NY2017

Lectures

• Experts or to Find Wisdom in the Entire Crowd? 
  University City, CA - 1/1/2017
• Support Content: Better to Learn from 
  University City, CA - 1/1/2017
• Data-Mining Electronic Medical Records for Decision 
 
  University City, CA - 1/1/2017
• Deep Cohort Studies: From Google Baseline to the Precision Medicine Initiative to VA's Million Veterans 
  University City, CA - 1/1/2017
• The Physician Data Scientist an Unexpected Journey 
  1/1/2017
• Wisdom of the Crowd or Tyranny of the Mob? Data-Mining Electronic Health Records for Clinical Decision Support 
  1/1/2016
• Usability of an Automated Recommender System for Clinical Order Entry 
  1/1/2016
• Automated Organization of Electronic Health Record Data by Probabilistic Topic Modeling to Inform Clinical Decision Making 
  San Francisco, CA - 1/1/2016
• Decaying Relevance of Clinical Data when Predicting Future Decisions 
  1/1/2016
• Data-Mining Electronic Medical Records for Clinical Order Recommendations, Wisdom of the Crowd or Tyranny of the Mob? 
  San Francisco, CA - 1/1/2015
• Data-Mining Electronic Health Records for Clinical Decision Support 
  1/1/2015
• OrderRex: Data-Mining Clinical Decision Support from Electronic Medical Records, Wisdom of the Crowd or Tyranny of the Mob? 
  1/1/2015
• Automated Physician Order Recommendations and Outcome Predictions by Data-Mining Electronic Medical Records 
  San Francisco, CA - 1/1/2014
• Mining for Clinical Expertise in (Undocumented) Electronic Order Sets 
  San Francisco, CA - 1/1/2013
• Physician Order Suggestions by Clinical Expertise Mined from (Undocumented) Order Sets 
  1/1/2012
• Reaction Explorer: Organic chemistry online tutorial system for multistep synthesis and mechanism problems adapted to engage students through gaming interfaces 
  Anaheim, CA - 1/1/2011
• Reaction simulation expert system for synthetic organic chemistry 
  Salt Lake City, UT - 1/1/2009
• Synthesis Explorer: Organic chemistry tutorial system for multistep synthesis and mechanism problems with personalized assessment and adaptive problem generation 
  Salt Lake City, UT - 1/1/2009
• Artificial Intelligence in Chemistry: An Expert Computer System for Predicting Organic Chemistry Reactions 
  1/1/2009
• Reaction mechanism prediction by transformation rules and general principles 
  Philadelphia, PA - 1/1/2008
• Organic Reaction Expert Systems 
  1/1/2008
• Reaction prediction, classification, and retro-synthesis using a rule-based reaction expert system 
  New Orleans, LA - 1/1/2008
• Synthesis Explorer: Organic chemistry tutorial system for multistep synthesis design and reaction mechanism prediction 
  New Orleans, LA - 1/1/2008
• Synthesis Explorer: Dynamically generated reaction and synthesis problems for organic chemistry education 
  Chicago, IL - 1/1/2007
• ChemDB: A public database of small molecules and related chemoinformatics resources 
  Chicago, IL - 1/1/2007
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Other

• Deep Cohort Studies: From Google Baseline to the Precision Medicine Initiative to VA's Million Veterans 
  Chen JH, NIH/NIDA Clinical Trials Network (Webinar)
  1/1/2017
• Opioid Prescribing Distribution: What if it's not just a few bad apples? 
  Chen JH, NIH/NIDA Clinical Trials Network (Webinar)
  1/1/2016
• Preparing for Scholarly Presentations for AMIA Annual Symposium 
  Chen JH, AMIA Student Working Group, Webinar
  1/1/2014