JonathanH.ChenMD

PubMed

• 147 citations
  Responding to the opioid crisis in North America and beyond: recommendations of the Stanford-Lancet Commission.
  Keith Humphreys, Chelsea L Shover, Christina M Andrews, Amy S B Bohnert, Margaret L Brandeau
  Lancet. 2022-02-05
• 12 citations
  Prediction of Coronary Artery Calcium Using Deep Learning of Echocardiograms.
  Neal Yuan, Alan C Kwan, Grant Duffy, John Theurer, Jonathan H Chen
  Journal of the American Society of Echocardiography. 2023-05-01
• 19 citations
  Deep learning evaluation of biomarkers from echocardiogram videos.
  J. Weston Hughes, Neal Yuan, Bryan He, Jiahong Ouyang, Joseph E. Ebinger
  Ebiomedicine. 2021-10-14

Journal Articles

• The training of next generation data scientists in biomedicine  
  Garmire, L.X., Gliske, S., Nguyen, Q.C., Chen, J.H., Nemati, S., Van Horn, J.D., Moore, J.H., Shreffler, C., Dunn, M, Pacific Symposium of Biocomputing, 1/1/2017
• Decaying Relevance of Clinical Data Towards Future Decisions in Data-Driven Inpatient Clinical Order Sets  
  Chen, J.H., Alagappan, M., Goldstein, M.K., Asch, S.M., Altman, R.B, International Journal of Medical Informatics, 1/1/2017
• Machine Learning and Prediction in Medicine - Beyond the Peak of Inflated Expectations  
  Chen, J.H., Asch, S.M., New England Journal of Medicine, 1/1/2017
• Internal Medicine Resident Computer Usage: An Electronic Audit of an Inpatient Service  
  Ouyang D, Chen JH, Hom J, Chi J, JAMA Intern. Med, 1/1/2016
• Distribution of Opioids by Different Types of Medicare Prescribers  
  Chen JH, Humphreys K, Shah NM, Lembke A, JAMA Intern. Med, 1/1/2016
• Dynamically Evolving Clinical Practices and Implications for Predicting Medical Decisions  
  Chen JH, Goldstein MK, Asch SM, Mackey L, Altman RB, Pacific Symposium of Biocomputing, 1/1/2016
• he Patient You Least Want to See (A Piece of My Mind)  
  Chen JH, JAMA, 1/1/2016
• Patient Outcomes When Housestaff Exceed Eighty Hours per Week  
  Ouyang D, Chen JH, Krishnan G, Hom J, Witteles R, Chi J, Am. J. Med, 1/1/2016
• Fulfilling Outpatient Medicine Responsibilities During Internal Medicine Residency: A Quantitative Study of Housestaff Participation with Between Visist Tasks  
  Hom, J., Richman, I., Chen, J.H., Singh, B., Crump, C., Chi, J, BMC Med. Educ, 1/1/2016
• Use of Opioid Agonist Therapy for Medicare Patients in 2013  
  Lembke, A., Chen, J.H., JAMA Psychiatry, 1/1/2016
• Predicting Inpatient Clinical Order Patterns with Probabilistic Topic Models vs Conventional Order Sets  
  Chen, J.H., Goldstein, M.K., Asch, S.M., Mackey, L., Altman, R.B, Journal of the American Medical Informatics Association, 1/1/2016
• Effect of Opioid Prescribing Guidelines in Primary Care  
  Chen, J.H., Hom, J., Richman, I., Asch, S.M., Podchiyska, T., Atwan Johansen, N, Medicine, 1/1/2016
• Why providers transfuse blood products outside recommended guidelines in spite of integrated electronic best practice alerts  
  Chen JH, Fang DZ, Tim Goodnough L, Evans KH, Lee Porter M, Shieh L, J. Hosp. Med, 1/1/2015
• Development and Evaluation of an Electronic Medical Record-Based Best-Practice Discharge Checklist for Hospital Patients  
  Garg T, Lee JY, Evans KH, Chen J, Shieh L. Safety, Jt. Comm. J. Qual. Patient Saf, 1/1/2015
• Data-Mining Electronic Medical Records for Clinical Order Recommendations: Wisdom of the Crowd or Tyranny of the Mob?  
  Chen JH, Altman RB, AMIA Jt. Summits Transl. Sci. Proc. AMIA Summit Transl. Sci, 1/1/2015
• Improving and sustaining a reduction in iatrogenic pneumothorax through a multi-faceted quality-improvement approach  
  Shieh L, Go M, Gessner D, Chen JH, Hopkins J, Maggio P, J. Hosp. Med, 1/1/2015
• OrderRex: clinical order decision support and outcome predictions by data-mining electronic medical records  
  Chen JH, Podchiyska T, Altman RB, J. Am. Med. Informatics Assoc, 1/1/2015
• Automated physician order recommendations and outcome predictions by data-mining electronic medical records  
  Chen JH, Altman RB, AMIA Jt. Summits Transl. Sci. Proc. AMIA Summit Transl. Sci, 1/1/2014
• Mining for clinical expertise in (undocumented) order sets to power an order suggestion system  
  Chen JH, Altman RB, AMIA JT. Summits Transl. Sci. Proc. AMIA Summit Transl. Sci, 1/1/2013
• Learning to predict chemical reactions  
  Kayala MA, Azencott C-A, Chen JH, Baldi P, J. Chem. Inf. Model, 1/1/2011
• Reaction Explorer: Towards a Knowledge Map of Organic Chemistry To Support Dynamic Assessment and Personalized Instruction  
  Chen JH, Kayala MA, Baldi P, Enhancing Learning with Online Resources, Social Networking, and Digital Libraries., 1/1/2010
• No electron left behind: a rule-based expert system to predict chemical reactions and reaction mechanisms  
  Chen JH, Baldi P, J. Chem. Inf. Model, 1/1/2009
• Synthesis Explorer: A Chemical Reaction Tutorial System for Organic Synthesis Design and Mechanism Prediction  
  Chen JH, Baldi P, J. Chem. Educ, 1/1/2008
• One- to four-dimensional kernels for virtual screening and the prediction of physical, chemical, and biological properties  
  Azencott C-A, Ksikes A, Swamidass SJ, Chen JH, Ralaivola L, Baldi P, J. Chem. Inf. Model, 1/1/2007
• Chem DB update - full-text search and virtual chemical space  
  Chen JH, Linstead E, Swamidass SJ, Wang D, Baldi P, Bioinformatics, 1/1/2007
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Books/Book Chapters

• Guide to Big Data Applications 
  Chapter: The Impact of Big Data on the Physician 
  Le, E., Iyer, S., Patil, T., Li, R., Chen, J. H., Wang, M., & Sobel, E.Editors: S. Srinivasan.Springer, New York, NY2017

Lectures

• The Physician Data Scientist an Unexpected Journey 
  1/1/2017
• Deep Cohort Studies: From Google Baseline to the Precision Medicine Initiative to VA's Million Veterans 
  University City, CA - 1/1/2017
• Data-Mining Electronic Medical Records for Decision 
 
  University City, CA - 1/1/2017
• Support Content: Better to Learn from 
  University City, CA - 1/1/2017
• Experts or to Find Wisdom in the Entire Crowd? 
  University City, CA - 1/1/2017
• Decaying Relevance of Clinical Data when Predicting Future Decisions 
  1/1/2016
• Automated Organization of Electronic Health Record Data by Probabilistic Topic Modeling to Inform Clinical Decision Making 
  San Francisco, CA - 1/1/2016
• Usability of an Automated Recommender System for Clinical Order Entry 
  1/1/2016
• Wisdom of the Crowd or Tyranny of the Mob? Data-Mining Electronic Health Records for Clinical Decision Support 
  1/1/2016
• Data-Mining Electronic Medical Records for Clinical Order Recommendations, Wisdom of the Crowd or Tyranny of the Mob? 
  San Francisco, CA - 1/1/2015
• OrderRex: Data-Mining Clinical Decision Support from Electronic Medical Records, Wisdom of the Crowd or Tyranny of the Mob? 
  1/1/2015
• Data-Mining Electronic Health Records for Clinical Decision Support 
  1/1/2015
• Automated Physician Order Recommendations and Outcome Predictions by Data-Mining Electronic Medical Records 
  San Francisco, CA - 1/1/2014
• Mining for Clinical Expertise in (Undocumented) Electronic Order Sets 
  San Francisco, CA - 1/1/2013
• Physician Order Suggestions by Clinical Expertise Mined from (Undocumented) Order Sets 
  1/1/2012
• Reaction Explorer: Organic chemistry online tutorial system for multistep synthesis and mechanism problems adapted to engage students through gaming interfaces 
  Anaheim, CA - 1/1/2011
• Artificial Intelligence in Chemistry: An Expert Computer System for Predicting Organic Chemistry Reactions 
  1/1/2009
• Synthesis Explorer: Organic chemistry tutorial system for multistep synthesis and mechanism problems with personalized assessment and adaptive problem generation 
  Salt Lake City, UT - 1/1/2009
• Reaction simulation expert system for synthetic organic chemistry 
  Salt Lake City, UT - 1/1/2009
• Synthesis Explorer: Organic chemistry tutorial system for multistep synthesis design and reaction mechanism prediction 
  New Orleans, LA - 1/1/2008
• Reaction prediction, classification, and retro-synthesis using a rule-based reaction expert system 
  New Orleans, LA - 1/1/2008
• Organic Reaction Expert Systems 
  1/1/2008
• Reaction mechanism prediction by transformation rules and general principles 
  Philadelphia, PA - 1/1/2008
• ChemDB: A public database of small molecules and related chemoinformatics resources 
  Chicago, IL - 1/1/2007
• Synthesis Explorer: Dynamically generated reaction and synthesis problems for organic chemistry education 
  Chicago, IL - 1/1/2007
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Other

• Deep Cohort Studies: From Google Baseline to the Precision Medicine Initiative to VA's Million Veterans 
  Chen JH, NIH/NIDA Clinical Trials Network (Webinar)
  1/1/2017
• Opioid Prescribing Distribution: What if it's not just a few bad apples? 
  Chen JH, NIH/NIDA Clinical Trials Network (Webinar)
  1/1/2016
• Preparing for Scholarly Presentations for AMIA Annual Symposium 
  Chen JH, AMIA Student Working Group, Webinar
  1/1/2014