JanAnthonyNowakMDPhD

PubMed

• A Primer on Chimeric Antigen Receptor T-cell Therapy: What Does It Mean for Pathologists?
  Allison M. Cushman-Vokoun, Karl V. Voelkerding, Mark K. Fung, Jan A. Nowak, John A. Thorson
  Archives of Pathology & Laboratory Medicine. 2021-06-01
• 63 citations
  Collection and Handling of Thoracic Small Biopsy and Cytology Specimens for Ancillary Studies: Guideline From the College of American Pathologists in Collaboration Wit...
  Sinchita Roy-Chowdhuri, Sanja Dacic, Mohiedean Ghofrani, Peter B. Illei, Lester J. Layfield
  Archives of Pathology & Laboratory Medicine. 2020-05-13
• 2 citations
  Evaluating the Adoption of Laboratory Practice Guidelines
  Jeff Goldsmith, Patrick L. Fitzgibbons, Lisa A. Fatheree, J. Rex Astles, Jan A. Nowak
  Archives of Pathology & Laboratory Medicine. 2020-01-01

Journal Articles

• Comprehensive Genomic Profiling Identifies a Subset of Crizotinib-Responsive ALK-Rearranged Non-Small Cell Lung Cancer Not Detected by Fluorescence In Situ Hybridization  
  Ali SM, et al (JA Nowak), Oncologist, 1/1/2016
• The cancer genome resource list 2014  
  Zutter, MM, et al (JA Nowak), Arch Pathol Lab Med, 1/1/2015
• Revisiting oversight and regulation of molecular-based laboratory-developed tests: a position statement of the Association for Molecular Pathology  
  Ferreira-Gonzalez, A, et al (JA Nowak), J Mol Diagn, 1/1/2014
• Developing precision medicine in a global world  
  Rubin, EH, et al (JA Nowak), Clin Cancer Res, 1/1/2014
• Mining formalin fixed, paraffin embedded tissues: a wealth of knowledge or fools' gold?  
  Nakhleh, RE and JA Nowak, Arch Pathol Lab Med, 1/1/2014
• How will the $1,000 Genome meet reality (and CMS)?  
  Morrison, C, D Trump, and JA Nowak, Arch Pathol Lab Med, 1/1/2014
• Template for reporting results of biomarker testing of specimens from patients with non-small cell carcinoma of the lung  
  Cagle, PT, et al (JA Nowak), Arch Pathol Lab Med, 1/1/2014
• Summary of microsatellite instability test results from laboratories participating in proficiency surveys - proficiency survey results from 2005 to 2012  
  Boyle, T, et al (JA Nowak), Arch Pathol Lab Med, 1/1/2014
• Template for reporting results of biomarker testing of specimens from patients with carcinoma of the colon and rectum  
  Bartley, AN, et al (JA Nowak), Arch Pathol Lab Med, 1/1/2014
• Comprehensive review of the diagnosis and treatment of biliary tract cancer 2012 PART II: Multidisciplinary management  
  Marsh, RDW, et al (JA Nowak), J Surg Oncol, 1/1/2012
• Personalized medicine? Who has the tissue?  
  Nowak, JA, Arch Pathol Lab Med, 1/1/2012
• Relevance, pathogenesis, and testing algorithm for mismatch repair-defective colorectal carcinomas: a report of the Association for Molecular Pathology  
  Funkhouser, WK et al (JA Nowak), J Mol Diagn, 1/1/2012
• Comprehensive review of the diagnosis and treatment of biliary tract cancer 2012 PART I: Diagnosis-clinical staging and pathology  
  Marsh, RDW, et al (JA Nowak), J Surg Oncol, 1/1/2012
• Influenza A subtyping – Seasonal H1N1, H3N2, and the appearance of novel H1N1  
  Kaul, K.L., K.A. Mangold, H. Du, K.M. Pesavento, J. Nawrocki, and J.A. Nowak, J Mol Diagn, 1/1/2010
• Guidance for fluorescence in situ hybridization testing in hematologic disorders  
  Wolff, D.J., A. Bagg, L.D.Cooley, et al (JA Nowak), J Mol Diagn, 1/1/2007
• A reasoned approach to preparing for Pandemic Influenza  
  Nowak, J. A., Advance/Laboratory, 1/1/2006
• Cervical Cancer and HPV  
  Nowak, J.A., Telomerase, Clinics in Laboratory Medicine, 1/1/2000
• Performing rapid PCR without a thermocycler  
  Nowak, J.A., E. Marinus, V. Kumar, and J.A. Nowak, Biotech Lab International, 1/1/1998
• Telomerase activity and expression of its RNA component in cervical lesions  
  Yakshima, K., R. Ashfaq, J. Nowak, V. Van Gruenigen, S. Milchgrub, A. Rathi, J. Albores-Saavedra, J.W. Shay, and A. Gazdar, Cancer, 1/1/1998
• Regulators of proliferation and apoptosis in carcinoma of the larynx  
  Whisler,L.C., N. Wood, D.C. Calderelli, et al (JA Nowak), Laryngoscope, 1/1/1998
• Estimates of Helicobacter pylori densities in the gastric mucus layer by PCR, histologic examination, and CLOtest  
  Nowak, J.A., B. Forouzandeh, and J.A. Nowak, Am J Clin Pathol, 1/1/1997
• Deletions of chromosome 3p are frequent and early events in the pathogenesis of uterine cervical carcinoma  
  Wistuba, I.I., F.D. Montellano, S. Milchgrub, A.V. Virmani, C. Behrens, H. Chen, M. Ahmadian, J.A. Nowak, C. Muller, J.D. Minna, and A. F. Gazdar, Cancer Res, 1/1/1997
• Acute primary human immunodeficiency virus type 1 infection in a patient with concomitant cytomegalovirus encephalitis  
  Berger, D.S., G. Bucher. J.A. Nowak, P.J. Gomatos, Clin Inf Dis, 1/1/1996
• p53 and JC virus infection in progressive multifocal leukoencephalopathy  
  Nowak, J.A., P. Mhawech, and C.W. Wirtanen, Hum Pathol, 1/1/1995
• Limitation of histology for detecting Helicobacter pylori  
  Nowak, J.A., Gastrointest Endosc, 1/1/1995
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Books/Book Chapters

• Mycoplasmas, Vol. I, Cell Biology 
  Chapter: Mycoplasma and spiroplasma viruses: molecular biology 
  Maniloff, J., J. Das, R.M. Putzrath, and J.A. NowakEditors: M.F. Barile and S. Razin.Academic Press, New York, NY1979
• Single-Stranded DNA Phages 
  Chapter: Single-stranded DNA mycoplasma-viruses 
  Maniloff, J., J.Das, and J.A.NowakEditors: D. Denhardt, D.Dressler, and D.S. Ray.Cold Spring Harbor Laboratory, New York, NY1978
• Beltsville Symp Agr Res Vol. I: Virology in Agriculture 
  Chapter: Mycoplasmaviruses: virus-cell interactions 
  Maniloff, J., J.Das, and J.A.NowakAllenheld, Osmun and Co., Montclair, NJ1977
• Genomic Applications in Pathology 
  Chapter: Regulatory and reimbursement issues in genomic testing 
  Nowak, JAEditors: Netto GE and Schrijver, I.Springer, New York, NY
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Abstracts/Posters

• A non-bisulfite based DNA methylation assay to detect MGMT promoter methylation
  Sabatini, LM, Nowak, JA, Bouma, M, Krispin, M, and Petrisko, J, Association for Molecular Pathology, Washington, DC, 1/13/2014
• Molecular Cytology: next generation sequencing of tumor cells recovered from Papanicolaou stained cytologic smears
  Sabatini, LM, Bouma, M, and Nowak, J, Association for Molecular Pathology, Washington, DC, 1/13/2014
• Molecular Cytology: Validation of a Method for the Direct Molecular Evaluation of Pap Stained Cellular Material
  Gibson, WE and JA Nowak, US - Canadian Academy of Pathology Annual Meeting, San Diego, CA, 1/2/2014
• Are the Pathological Features and BRAF Status of Micro and Macro Papillary Thyroid Carcinoma Different?
  Madorin, K, et al, 83rd Annual Meeting of the American Thyroid Association, San Juan, Puerto Rico, 1/16/2013
• Absence of BRAF and NRAS mutations in chronic lymphocytic thyroiditis and primary thyroid lymphomas
  Thakral, B. et al, US - Canadian Academy of Pathology Annual Meeting, Baltimore, MD, 1/3/2013
• The effects of Neoadjuvant Chemoradiation Therapy on Microsatellite Instabilityt and Mismatch repair Reporting in Rectal Adenocarcinoma
  Bit-Ivan, E. and J.A. Nowak, Mod Pathol; USCAP Annual Meeting, San Antonio, TX, 1/26/2011
• Biological Disaster Preparedness In The Age Of Molecular Diagnostics: A Survey Of Community Laboratory Capabilities Across The United States
  Jeng K, Mohareb A, Yang J, Downey A, Kecojevic A, Hsieh YH, Carroll K C, Gaydos C, Nowak J, Mangal C, Rothman RE, Academic Emergency Medicine; Society for Academic Emergency Medicine Annual Meeting, Boston, MA, 1/1/2011
• Influenza A Subtyping: Seasonal H1N1, H3N2, and the Appearance of Novel H1N1
  Pesavento, K.M., K.A.Mangold, J. Nawrocki, J.A. Nowak, and K.L. Kaul, J Mol Diag, 1/1/2009
• Collaboration of Community and Public Health Laboratories during 2009 Novel H1N1 (Swine) Influenza A Outbreak
  Nowak, J.A., K.L. Kaul, L. Sabatini, M.K. Hayden, J. Nawrocki, and G. Dizikes, J Mol Diag, 1/1/2009
• Collective Review of Five Years Experience with MSI Evaluation of Colorectal Tumors
  Ohman, C., L. Sabatini, and J. Nowak, J Mol Diag, 1/1/2008
• Validation and Performance of the Abbott RealTime HIV-1 and HCV Assays
  Mazur,L., J. Dylewska, J. Nowak, and L. Sabatini, J Mol Diag, 1/1/2008
• Format, context, and use of language in clinical result reports for DNA-based Cystic Fibrosis testing
  Lubin,I.M., M.Caggana, C.Constantin, D.J.Wolff, and J.A.Nowak, American College of Medical Genetics, Annual Clinical Genetics Meeting, Grapevine, TX, 1/17/2005
• B Strep (GBS) assay: a rapid, multiplex assay for the detection of GBS in pregnant women during labor
  Jordan,J.A., P.P.Koty, W.Wang, J.A.Nowak, L.Western, J.M.Ernst, E.L.Palavecino, A.Mokkapati, L.Yuan, B.S.Moon, Y.Kim, and W.McMillan, The GeneXpert Group, American Society for Microbiology, 105th General Meeting, Atlanta, GA, 1/5/2005
• Cystic Fibrosis carrier testing: The collection and utility of ethnicity/race information on the laboratory
  Lubin,I.M., M.Caggana, D.J.Wolff, C.Constantin, L.Kalman, and J.A.Nowak, American Society of Human Genetics, Annual Meeting, Toronto, Canada, 1/1/2004
• Cystic Fibrosis DNA-based testing: variability and potential impact of information collected on the laboratory requisition form
  Caggana,M.,C.Constantin, L.Kalman, D.J.Wolff, J.A. Nowak, I.M.Lubin, and the Association for Molecular Pathology CF Working Group, J Mol Diagn, 1/1/2004
• Detection of HPV in formalin-fixed, paraffin embedded samples of endocervical adenocarcinoma with the Digene HC2 HPV DNA assay
  Borys, D., D. Roy, and J.A. Nowak, J Mol Diagn, 1/1/2003
• Immunohistochemical localization of telomerase catalytic component (hTERT) in benign and malignant breast tissue
  Margolis,B., and J.A.Nowak, Mod Pathol, 1/1/2000
• Limitations of RHD genotyping in Rh negative individuals
  Nowak,J.A., S.Khan, K.Matlhagela, F.Darwish, and V.Lewis, Association for Molecular Pathology Annual Meeting, St. Louis, MO, 1/1/1999
• RHD genotyping in Rh negative donors in Bahrain and Botswana
  Nowak,J.A., S.Khan, K.Matlhagela, F.Darwish, and V.Lewis, Transfusion, 1/1/1999
• Effect of acute Helicobacter pylori infection on gastric emptying
  Nowak,T.V., J.Slack, and J.A.Nowak, Gastroenterology, 1/1/1999
• Lack of evidence of association of human herpesvirus 8 and carcinomas in patients positive for human immunodeficiency virus
  Phadke,DM.,E.Weisenberg, J.A.Nowak, and D.P.Rhone, Am J Clin Pathol, 1/1/1999
• Validation of the PCR string test (Entero-test) in the diagnosis of Helicobacter pylori gastritis
  Lynch,S., T.V.Nowak, J.A.Nowak, F.Konicek, K.Ghazanfari, and A.Olivera, Gastroenterology, 1/1/1998
• Evaluation of serological assays for H. pylori, CagA and VacA antibodies in pediatric patients with abdominal pain
  Chong,S.K.F., T.V Nowak, J.A.Nowak, S.Mohindra, N.Iglitzen, and J.H.Kalbfleisch, Gastroenterology, 1/1/1998
• Variability in Roche HIV-1 Monitor assay reagent performance
  Harder,R.J., C.Sutherland, M.E.Nowak, J.Espinosa, and J.A.Nowak, Am J Pathol, 1/1/1998
• Inter-laboratory Roche HIV-1 Monitor performance evaluation based on QS index
  Harder,R. and J.A.Nowak, Am J Pathol, 1/1/1998
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Lectures

• Molecular Pathology Tests for Prognosis in Common Cancers 
  Baltimore, MD - 1/24/2015
• Emerging Concepts in Anatomic Pathology 
  Tucson, AZ - 1/16/2015
• Understanding and Avoiding Common Quality Deficiencies in Anatomic Pathology 
  Tucson, AZ - 1/16/2015
• A Discussion About Laboratory Developed Tests - The Debate Over Regulatory Oversight 
  Chicago, IL - 1/11/2015
• Framework for Regulatory Oversight of Laboratory Developed Tests 
  Bethesda, MD - 1/8/2015
• Molecular Biomarker testing in Colorectal Cancer 
  New York, NY - 1/2/2015
• The Practitioner's Guide to Using Molecular Testing - How to Talk with Your Pathologist about Molecular Testing 
  Chicago, IL - 1/30/2014
• Practice Models for Biomarker Science 
  Houston Methodist Hospital, Houston, TX - 1/22/2014
• Reimbursement Issues Surrounding Genomic Testing 
  Roswell Park Cancer Institute, Buffalo, NY - 1/13/2014
• The Application of Molecular Techniques to the Cellular Specimen: Thyroid Tumors and Pre-surgical Testing of FNA Specimens of Thyroid Nodules 
  National Centre of Pathology, Vilnius, Lithuania - 1/2/2014
• Molecular Genetic Evaluation of Colorectal Tumors: Evaluation for Potential Lynch Syndrome 
  National Centre of Pathology, Vilnius, Lithuania - 1/2/2014
• Molecular Biomarker Evaluation of Non-Small Cell Lung Cancers: Testing for KRAS, EGFR, ALK and ROS-1 
  National Centre of Pathology, Vilnius, Lithuania - 1/2/2014
• Ins and Outs of Coding with the New Molecular Pathology CPT Procedure Codes 
  1/26/2013
• CAP Presentation: Accreditation Journey - Is your laboratory's quality on the mark? 
  Tucson, AZ - 1/13/2013
• Role of the Pathologist in Validation and Interpretation of Molecular Oncology Tests 
  Medical University of South Carolina Gadsden, Kiawah Island, SC - 1/12/2012
• Testing Guidelines for Lung Cancer and Colon Cancer: Estimating Tumor Fraction 
  Rosemont, IL - 1/7/2012
• Testing Guidelines for Lung Cancer and Colon Cancer: Is Bigger Better? 
  Rosemont, IL - 1/7/2012
• Living the Transformation: One Pathologist's Perspective 
  Chicago, IL - 1/29/2011
• Gene Patents - The Future of Gene Research in an Era of Patents - Scientific and Legal Considerations 
  Las Vegas, NV - 1/21/2011
• The Molecular Pathology of Colon Cancer for the Community Hospital Pathologist 
  San Antonio, TX - 1/15/2011
• KRAS Testing and Tumor Heterogeneity in Colon Cancer 
  Baylor College of Medicine, Houston, TX - 1/13/2011
• Microsatellite Instability, Mis-Match Repair and Colon Cancer 
  Thorek Hospital, Chicago, IL - 1/1/2009
• Swine Flu: Testing the Lab Response to an Epidemic - Now and a Glimpse of Possibilities 
  1/1/2009
• A Glance into the Future of Molecular Pathology 
  Copenhagen, Denmark - 1/1/2009
• The Contribution of Community Molecular Diagnostics Laboratories to the H1N1 Influenza Pandemic 
  Rosemont, IL - 1/1/2009
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Other

• Colorectal Cancer 
  Nowak J with E. Chan, MD, Molecular Oncology Tumor Boards
  https://connection.asco.org/discussion/colorectal-cancer-may-2015-molecular-oncology-tumor-boards#sthash.fMxT34cY.dpuf
  1/1/2015
• Proposal to address CPT coding for Genomic Sequencing Procedures, a report 
  Kant, J.A. et al (JA Nowak), Association for Molecular Pathology Economic Affairs Committee
  1/1/2013
• Association for Molecular Pathology (AMP) Proposal for CPT Coding Reform in Molecular Diagnostics - a report 
  Kant, J.A. et al (JA Nowak), AMP Economic Affairs Committee
  1/1/2009