JamesC.PhillipsMD

PubMed

• NAMD goes quantum: an integrative suite for hybrid simulations.
  Melo, MCR.,Bernardi, R. C.,Rudack, T.,Scheurer, M.,Riplinger, C.,Phillips, J. C.,Maia, JDC.,Rocha, G. B.,Ribeiro, J. V.,Stone, J. E.,Neese, F.,Schulten, K.,Luthey-Schu...> ;Nat. Methods. 2018 Mar 27
• Early Experiences Porting the NAMD and VMD Molecular Simulation and Analysis Software to GPU-Accelerated OpenPOWER Platforms.
  Stone, J. E.,Hynninen, A. P.,Phillips, J. C.,Schulten, K.> ;High Perform Comput (2016). 2016 Jun 01
• Multilevel Summation Method for Electrostatic Force Evaluation.
  Hardy, D. J.,Wu, Z.,Phillips, J. C.,Stone, J. E.,Skeel, R. D.,Schulten, K.> ;J Chem Theory Comput. 2015 Feb 19
• Multiple-Replica Strategies for Free-Energy Calculations in NAMD: Multiple-Walker Adaptive Biasing Force and Walker Selection Rules.
  Comer, J.,Phillips, J. C.,Schulten, K.,Chipot, C.> ;J Chem Theory Comput. 2015 Nov 20
• Generalized Scalable Multiple Copy Algorithms for Molecular Dynamics Simulations in NAMD.
  Jiang, W.,Phillips, J. C.,Huang, L.,Fajer, M.,Meng, Y.,Gumbart, J. C.,Luo, Y.,Schulten, K.,Roux, B.> ;Comput Phys Commun. 2014 Jun 20
• Parallel Generalized Born Implicit Solvent Calculations with NAMD.
  Tanner, D.E., Chan, K., Phillips, J.C., Schulten, K.> ;J Chem Theory Comput. 2011 Nov 8
• Getting Boozy in Books: Substance Use in Adolescent Literature.
  Coyne, S.M., Callister, M., Phillips, J.C.> ;Health Commun. 2011 Sep
• High-performance scalable molecular dynamics simulations of a polarizable force field based on classical Drude oscillators in NAMD.
  Jiang, W., Hardy, D.J., Phillips, J.C., Mackerell, A.D., Schulten, K., Roux, B.> ;J Phys Chem Lett. 2011
• Nano-regime Length Scales Extracted from the First Sharp Diffraction Peak in Non-crystalline SiO(2) and Related Materials: Device Applications.
  Lucovsky, G., Phillips, J.C.> ;Nanoscale Res Lett. 2010
• A stringent test for hydrophobicity scales: two proteins with 88% sequence identity but different structure and function.
  Kister, A.E., Phillips, J.C.> ;Proc Natl Acad Sci U S A. 2008 Jul 8
• Accelerating molecular modeling applications with graphics processors.
  Stone, J.E., Phillips, J.C., Freddolino, P.L., Hardy, D.J., Trabuco, L.G., Schulten, K.> ;J Comput Chem. 2007 Dec
• Correcting Mesh-Based Force Calculations to Conserve Both Energy and Momentum in Molecular Dynamics Simulations.
  Skeel, R.D., Hardy, D.J., Phillips, J.C.> ;J Comput Phys. 2007 Jul 1
• Scalable molecular dynamics with NAMD.
  Phillips, J. C., Braun, R., Wang, W., Gumbart, J., Tajkhorshid, E., Villa, E., Chipot, C., Skeel, R. D., Kalé, L., Schulten, K.> ;J Comput Chem. 2005 Dec
• Molecular dynamics simulations of discoidal bilayers assembled from truncated human lipoproteins.
  Shih, A.Y., Denisov, I.G., Phillips, J.C., Sligar, S.G., Schulten, K.> ;Biophys J. 2005 Jan
• Large scale simulation of protein mechanics and function.
  Tajkhorshid, E., Aksimentiev, A., Balabin, I., Gao, M., Isralewitz, B., Phillips, J.C., Zhu, F., Schulten, K.> ;Adv Protein Chem. 2003
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