ChristopherGChuteMD

PubMed

• 912 citations
  Mayo clinical Text Analysis and Knowledge Extraction System (cTAKES): architecture, component evaluation and applications
  Guergana Savova, James J. Masanz, Philip V. Ogren, Jiaping Zheng, Sunghwan Sohn
  Journal of the American Medical Informatics Association. 2010-09-01
• 304 citations
  The National COVID Cohort Collaborative (N3C): Rationale, Design, Infrastructure, and Deployment.
  Melissa A. Haendel, Christopher G. Chute, Tellen D. Bennett, David Eichmann, Justin Guinney
  Journal of the American Medical Informatics Association. 2021-03-01
• 573 citations
  The Human Phenotype Ontology in 2021
  Sebastian Köhler, Michael A. Gargano, Nicolas Matentzoglu, Leigh C. Carmody, David Lewis-Smith
  Nucleic Acids Research. 2021-01-08

Journal Articles

• The ICD: What it Means to Countries and to Global Health in 18th IFHIMA International Congress O Takahashi, Editor Tokyo  
  Borma, T, J Harrison, S Weber, and C Chute, IFHIMA, 1/1/2016
• Drug Normalization for Cancer Therapeutic and Druggable Genome Target Discovery  
  Jiang, G, S Sohn, MT Zimmermann, C Wang, H Liu, and CG Chute, AMIA Jt Summits Transl Sci Proc, 1/1/2015
• A formal model for RDF dataset constraints  
  Solbrig H, Prud’Hommeaux E, Chute CG, and Davies J, Lecture Notes in Computer Science, 1/1/2014
• Using semantic web technologies for quality measure phenotyping algorithm representation and automatic execution on EHR data IEEE-EMBS International Conference on Biom...  
  Shen F, Li D, Liu H, Lee Y, Pathak J, Chute CG, and Tao C, BHI, 1/1/2014
• Do we need a Common Ontology between ICD 11 and SNOMED CT to ensure Seamless Re-Use and Semantic Interoperability?  
  Rodrigues JM, Schulz S, Rector A, Spackman K, Ustun B, Chute CG, ... Kalra D, Stud Health Technol Inform, 1/1/2013
• Phenotyping on EHR data using OWL and semantic web technologies  
  Tao C, Li D, Shen F, Lian Z, Pathak J, Liu H, and Chute CG, Lecture Notes in Computer Science, 1/1/2013
• Mining anti-coagulant drug-drug interactions from electronic health records using linked data  
  Pathak J, Kiefer RC, and Chute CG, Lecture Notes in Computer Science, 1/1/2013
• Mining drug-drug interaction patterns from linked data: A case study for Warfarin, Clopidogrel, and Simvastatin  
  Pathak J, Kiefer RC, and Chute CG, IEEE BIBM, 1/1/2013
• Towards assigning references using semantic, journal and citation relevance  
  Li DC, Liu H, Chute CG, and Jonnalagadda SR, IEEE BIBM, 1/1/2013
• Prioritizing journals relevant to a topic for addressing clinician’s information needs  
  Jonnalagadda SR, Moosavinasab S, Li D, Abel MD, Chute CG, and Liu H, IEEE BIBM, 1/1/2013
• Using semantic web technologies for the generation of domain templates to support clinical study meta-data standards  
  Jiang G, Evans J, Endle CM, Solbrig HR, and Chute CG, CEUR Workshop Proceedings, 1/1/2013
• Ontology-based temporal relation modeling with map-reduce latent dirichlet allocations for big EHR data  
  Li D, Tao C, Liu H, and Chute C, CGC/SCA, 1/1/2012
• Applying Linked Data principles to represent patient’s electronic health records at Mayo Clinic: A case report  
  Pathak J, Kiefer RC, and Chute CG, IHI – Proceedings of the 2nd ACM SIGHIT International Health Informatics Symposium, 1/1/2012
• Towards Event Sequence Representation, Reasoning, and Visualization for EHR Data  
  Tao C, Wongsuphasawat K, Clark K, Plaisant C, Shneiderman B, and Chute CG, ACM SIGHIT International Health Informatics Symposium, 1/1/2012
• Modeling UIMA type system using web ontology language – Towards interoperability among UIMA-based NLP tools  
  Liu H, Wu S, Tao C, and Chute C, International Conference on Information and Knowledge Management, Proceedings, 1/1/2012
• Optimizing semantic MEDLINE for translational science studies using semantic web technologies  
  Tao C, Zhang Y, Jiang G, Bouamrane MM, and Chute CG, International Conference on Information and Knowledge Management, Proceedings, 1/1/2012
• Systematic analysis of cross-institutional medication description patterns in clinical notes  
  Sohn S, Murphy SP, Jonnalagadda SR, Wagholikar K, Wu ST, Chute CG, ... Halgrim S, Proceedings –IEEE 2nd Conference on Healthcare Informatics, Imaging and Systems Biology, HISB, 1/1/2012
• Proposed SKOS Extensions for BioPortal Terminology Services  
  Tao C, Noy N, Solbrig H, Shah N, Musen M, and Chute CG, JIST, 1/1/2011
• Generality and reuse in a common type system for clinical natural language processing  
  Wu ST, Kaggal VC, Savova GK, Liu H, Dligach D, Zheng J, ... Chute CG, International Conference on Information and Knowledge Management, Proceedings, 1/1/2011
• Toward semantic web based knowledge representation and extraction from electronic health records  
  Tao C, Pathak J, Welch SR, Bouamrane MM, Huff SM, and Chute CG, International Conference on Information and Knowledge Management, Proceedings, 1/1/2011
• Ontologies and integrated data resources at the click of a mouse  
  Whetzel PL, Noy N, Shah N, Alexander P, Dorf M, Fergerson R, ... Musen M, CEUR Workshop Proceedings, 1/1/2011
• A case study of ICD-11 anatomy value set extraction from SNOMED CT  
  Jiang G, Solbrig HR, Chalmers RJG, Spackman K, Rector AL, and Chute CG, CEUR Workshop Proceedings, 1/1/2011
• An ontological representation of adverse drug events  
  Jiang G, Duke JD, Pathak J, and Chute CG, CEUR Workshop Proceedings, 1/1/2011
• Mash-up of LexWiki and Web-Protege for Distributed Authoring of Large-Scale Biomedical Terminologies  
  Jiang G, Solbrig H, and Chute CG, ISMB Bio-Ontologies: Semantic Applications in Life Sciences, 1/1/2010
• Time-Oriented Question Answering from Clinical Narratives Using Semantic-Web Techniques  
  Tao C, Solbrig HR, Deepak S, Wei W-Q, Savova G, and Chute CG, International Semantic Web Conference, Lecture Note of Computer Science, 1/1/2010
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Books/Book Chapters

• Clinical Informatics Study Guide: Text and Review. 
  Chapter: Analytics. 
  Page 163 - 185Chute, CGEditors: J.T. Finnell, B.E. Dixon.Springer, Switzerland2015
• Healthcare Code Sets, Clinical Terminologies, and Classification Systems 
  Chapter: ICD-11 Preview 
  Page 128 - 137Chute CG, Ustun BEditors: Kathy Giannangelo.AHIMA, Chicago, ILEdition 3rd,2014
• Clinical Research Informatics. 
  Chapter: From Notations to Data: The Digital Transformation of Clinical Research. 
  Page 17 - 26Chute CGEditors: Richesson RL, Andrews JE.Springer, New York, NY2012
• Medical Informatics: Knowledge Management and Data Mining in Biomedicine. 
  Chapter: Medical Concept Representation. 
  Page 163 - 182Chute CGEditors: Chen H, Fuller S, Friedman C, Hersh W..Springer, New York, NY2005
• Encyclopedia of Genetics, Genomics, Proteomics and Bioinformatics. 
  Chapter: The Unified Medical Language System and Associated Vocabularies (Encyclopedia Entry). 
  Page 3400 - 3409Chute CGEditors: Subramaniam S.John Wiley & Sons Ltd.2005
• Information Technology Enabling Clinical Research: Findings and Recommendations from a Conference Sponsored by the Association of American Medical Colleges with funding from the National Science Foundations 
  Editors: Meyer RE, Ball MJ, Chute CG, et al.AAMC2003
• Cancer Informatics: Essential Technologies For Clinical Trials 
  Chapter: Translating Cancer Research into Cancer Care: Final Report of the Long Range Planning Committee. 
  Page 5 - 16Ball MJ, Becich MJ, Blayney DW, Campbell DN, Chute CG. et al2002
• Cancer Informatics: Essential Technologies For Clinical Trials 
  Chapter: Visions of the Future. 
  Page 17 - 32Ball MJ, Becich MJ, Blayney DW, Campbell DN, Chute CG. et al2002
• Cancer Informatics: Essential Technologies for Clinical Trials. 
  Chapter: The Spectrum of Existing and Emerging Health Data Standards: Their Relevance and Application to Cancer Information (Section 3 Introduction). 
  Page 99 - 101Chute CG, Langlotz CPEditors: Silva JS, Ball MJ, Chute CG, Douglas JV, Langlotz CP, Niland JC, Scherlis WL.Springer2002
• Cancer Informatics: Essential Technologies for Clinical Trials. 
  Chapter: Cancer Data, Information Standards, and Convergent Efforts (Chapter 7). 
  Page 102 - 105Chute CGEditors: Silva JS, Ball MJ, Chute CG, Douglas JV, Langlotz CP, Niland JC, Scherlis WL.Springer2002
• Cancer Informatics: Essential Technologies for Clinical Trials. Health Informatics. 
  Editors: Silva JS, Ball MJ, Chute CG, et al.Springer, New York, NY2002
• Case Mix: Global Views, Local Actions. 
  Chapter: Nomenclatures, Classifications and Case-Mix: From Patient Description to Abstraction. 
  Page 1 - 7Chute CGEditors: Roger France, FH, et al.Roger France, FH, et al2001
• Proceedings of the AMIA Annual Symposium 
  Editors: Chute, CG.Hanley & Belfus, Philadelphia, PA1998
• Healthcare informatics standards board inventory of health care information standards. 
  Blair J, Narcisi J, Turner A, Appavu S, Chute CG, Fitzmaurice JM, et alAmerican National Standards Board, New York, NY1997
• Toward an electronic patient record '96: proceedings. Volume One. 
  Chapter: Medical information retrieval and www browsers at Mayo. 
  Page 350 - 355Chute CG, Crowson DL, Buntrock JDMedical Records Institute, Newton, MA1996
• Special issue on concepts, knowledge, and language in health-care information systems (IMIA). Methods of Information in Medicine 
  Editors: McCray AT, Scherrer JR, Safran C, Chute CG.1995
• Client/ Server Computing with the SAS System: Tips and Techniques. 
  Chapter: Some considerations in designing SAS-based data management systems for large international epidemiologic studies. 
  Page 244 - 252Johnson C, Arrighi M, Van Grevenhof P, Mueller R, Panser L, Lee R, Chute CGSAS Institute Inc, Cary, NC1995
• The Encyclopedia of Higher Education. 
  Chapter: Epidemiology. 
  Page 2285 - 2292Chute CGEditors: Clark BR, Neave G.Pergamon Press, Oxford, England1992
• Autopsy in Epidemiology and Medical Research. 
  Chapter: Contributions of autopsy to population-based cancer epidemiology: Targeted intervention to improve ascertainment. 
  Page 207 - 216Chute CG, Ballard DJ, Nemetz PNEditors: E Riboli, M. Delendi.IARC Scientific Publication, Lyon1991
• Smoking and Hormone-Related Disorders. 
  Chapter: Smoking and Hormone-related disorders in the Nurses Health Study. 
  Page 20 - 31Stampfer M, Colditz GA, London SL, Chute CG, Rosner B, Willett WC, Hennekens CH, Speizer FEEditors: Wald N, Baron B.Oxford University Press, Oxford, England1990
• Proceeding on the Sixth Conference on Medical Informatics (MEDINFO '89) Amsterdam. 
  Chapter: Computerized Natural Medical Language Processing for Knowledge Representation: Overview of IMIA Working Group Conference, Geneva. 
  Page 878 - 881Chute CG and Cote RAEditors: B. Barber, et al.North-Holland1988
• Progress in occupational epidemiology. 
  Chapter: Estimating the Effect of Formaldehyde Exposure on Lung Cancer and Non-malignant Respiratory Disease (NMRD) Mortality Using a New Method to Control for the Healthy Worker Survivor Effect. 
  Page 75 - 78Robins JM, Pambrun M, Chute CG, Blevins DEditors: Hogstedt C, Reuterwall C.Elsevier, New York, NY1988
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Abstracts/Posters

• ICD-11 Common Ontology and Diagnostic Criteria.
  Solbrig HR, Jiang G, Chute CG, WHO Family of International Classifications Annual Meeting, Manchester, United Kingdom, 1/1/2015
• A semantic framework for quality data model to support EHR-driven phenotype authoring and execution
  Jiang G, Solbrig HR, Kiefer R, Rasmussen LV, Mo H, Speltz P, Thompson WK, Denny JC, Chute CG, Pathak J, AMIA Joint Summits on Translational Science, San Francisco, CA, 1/1/2015
• Harmonization of Quality Data Model with HL7 FHIR to Support EHR-driven Phenotype Authoring and Execution: A Pilot Study.
  Jiang G, Solbrig HR, Kiefer RC, Rasmussen L, Mo H, Pacheco JA, Montague E, Xu J, Speltz P, Thompson WK, Denny JC, Chute CG, Pathak J, AMIA Annual Symposium, San Francisco, CA, 1/1/2015
• Representing and Validating Cancer Study Metadata Standard Using RDF Shapes Expression Language.
  Solbrig HT, Prud'hommeaux E, Chute CG, Jiang G, AMIA Annual Symposium, San Francisco, CA, 1/1/2015
• Brand Persson K. ICD 11 and SNOMED CT common ontology: Circulatory system.
  Rodrigues JM, Schulz S, Rector A, Spackman K, Millar J, Campbell J, Üstün B, Chute C, Solbrig H, Della Mae V, MIE, Istanbul, Turkey, 1/31/2014
• What’s in a class? Lessons learnt from the ICD – SNOMED CT harmonization.
  Schulz S, Rodrigues JM, Rector A, Spackman K, Campbell J, Üstün B, Chute CG, Solbrig H, Della Mae V, Millar J, Brand Persson K, MIE, Istanbul, Turkey, 1/31/2014
• Building ICD-11 Terminology Services Using the Common Terminology Services 2 (CTS2) Standard
  Jiang G, Solbrig HR, Chute CG, WHO FIC, Barcelona, Spain, 1/11/2014
• Evaluating the Application of Star Allele Nomenclature for Pharmacogenomics in the Era of High-Throughput Sequencing
  Freimuth RR, Gordon AS, Zhu Q, Nickerson DA, Chute CG, Individualizing Medicine Conference, 1/7/2014
• Electronic Medical Records and Genomics – Translational Research from Genomic Discovery to Clinical Implementation
  Li R, Chisholm R, Bottinger E, Brilliant M, Carey D, Chute C, Hakonarson H, Harley J, Harris P, Holm I, Jarvik G, Kullo I, Larson EB, McCarty C, Odgis J, Wiley K, Rode..., NGHRI Scientific Symposium, Bethesda, MD, 1/1/2014
• Implementation of pharmacogenomics into clinical practice: Mayo Cinic experience
  Caraballo PJ, Bielinski S, Pathak J, Weinshilboum R, Farrugia G, Chute C , Black J, Elliott M, Schultz C, Rohrer-Vitek C, Gabrielson D, Blair D, Markulo M, Kullo I, ASHG Annual Meeting, San Diego, CA, 1/1/2014
• Evaluating the Application of Star Allele Nomenclature for Pharmacogenomics in the Era of High-Throughput Sequencing
  Gordan A, Zhu Q, Chute C, Nickerson D, Freimuth R, ASHG Annual Meeting, San Diego, CA, 1/1/2014
• Patient perspectives on the use of elctronic health records for research: the MI-GENES study
  Haddad RA, Jouni H, Isseh IN, McCormick JB, Chute CG , Kullo IJ, ASHG Annual Meeting, San Diego, CA, 1/1/2014
• Association of rare variants in LDLR, HMGCR, NAT2, ABCA1, and APOA1 with plasma lipid levels; initial results from the eMERGE PGx project
  Kullo IJ, Bielinski SJ, Carrell DS, Stallings S, Pathak J, Gordon A, Rasmussen-Torvik L, Dohney KF, Volpi S, Ritchie MD, Denny JC, Chute CG , Roden DM, Nickerson DA, J..., ASHG Annual Meeting, San Diego, CA, 1/1/2014
• Genome-wide association and gene-gene interaction studies to explore etiology of glaucoma and ocular hypertension
  Verma SS, Verma A, Lucas A, Linneman J, Peissig P, Brilliant M, McCarty CA, Haines JL, Vrabec TR, Tromp G, Pathak J, Chute C , Crosslin DR, Jarvik GP, Larson EB, Hays ..., ASHG Annual Meeting, San Diego, CA, 1/1/2014
• Evaluation of RxNorm for Medication Clinical Decision Support
  Freimuth RR, Wix K, Zhu Q, Siska M, Chute CG, AMIA Annual Symposium, Washington, DC, 1/1/2014
• Developing a section labeler for clinical documents
  Haug PJ, Wu X, Ferraro JP, Savova G, Huff SM, Chute CG, AMIA Annual Symposium, Washington, DC, 1/1/2014
• An automated approach for ranking journals to help in clinician decision support
  Jonnalagadda SR, Moosavanasab S, Nath C, Li DC, Chute CG , Liu H, AMIA Annual Symposium, Washington, DC, 1/1/2014
• A template for authoring and adapting genomic medicine content in the eMERGE Infobutton Project
  Overby CL, Rasmussen LV, Hartzler AL, Connolly JJ, Peterson JF, Hedberg RM, Freimuth RR, Shirts BH, Denny JC, Larson EB, Chute CG , Jarvik G, Ralston J, Shuldiner AR, ..., AMIA Annual Symposium, Washington, DC, 1/1/2014
• Adverse drug event-based stratification of tumor mutations: A case study of breast cancer patients receiving aromatose inhibitors.
  Wang C, Zimmermann MT, Prodduturi N, Chute CG , Jiang G, AMIA Annual Symposium, Washington, DC, 1/1/2014
• Genetic testing knowledge base (GTKB) towards individualized genetic test recommendation – an experimental study.
  Zhu Q, Liu H, Chute CG, Ferber M, AMIA Annual Symposium, Washington, DC, 1/1/2014
• Using electronic health ecords driven phenotyping for major depressive disorder.
  Pathak J, Hall-Flavin DK, Biernacka JM, Jenkins GD, Bruce KT, Murphy SP, Sagen JA, Skime MK, Bobo WV, Chute CG, Wang L, Weinshilboum RM, Biol Psychiatry, 1/1/2014
• Lexical term standardization of ICD-11 using semantic web technologies.
  Jiang G, Solbrig HR, Ustun B, Chute CG, AMIA Annual Symposium, 1/1/2014
• iGenetics: An individualized genetic test recommendation system based on EHRs
  Zhu Q, Liu H, Chute CG , Ferber M, AMIA Annual Symposium, 1/1/2014
• SHARPn Data Normalization Pipeline
  Kaggal V, Oniki T, Marchant K, Bleeker T, Solbrig H, Haug P, Wu Z, Schor M, Hart L, Beebe C, Huff S, Chute CG, Liu H, AMIA Joint Summits on Translational Science, San Francisco, CA, 1/21/2013
• Approaches to Improving Clinical and Translational Biomedical Research Data Through Data Standards: Registration of Clinical Element Models Using ISO/IEC 11179
  Warzel D, Freimuth R, Oniki T, Reeves D, Chute CG, Huff S, AMIA Joint Summits on Translational Science, San Francisco, CA, 1/21/2013
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Lectures

• TransMed consortium in Translator: Translator and Fanconi Anemia. 
  Bethesda, MD - 1/27/2017
• CRISP Update on Health Information Exchange in Maryland and the Region: Data Access for Research. 
  Bloomberg School of Public Health - 1/26/2017
• The Pluripotent Rendering of Clinical Data for Precision Medicine. 
  Hangzhou, China - 1/24/2017
• The Promise and Taming of Big Data: Potential Contributions of ICD11 
  Baltimore, MD - 1/23/2017
• Health Technology Assessment: Desiderata for data big and small. 
  Rome, Italy - 1/20/2017
• Data Big and Small: Healthcare Information Discovery 
  1/18/2017
• TransMed: A pilot effort to translate basic science to clinical practice. 
  Baltimore, MD - 1/17/2017
• Data Big and Small: Healthcare Information Discovery. 
  Mayo Clinic, Rochester, MN - 1/11/2017
• Some Observations on the International Classification of Diseases. 
  Vanderbilt University - 1/7/2017
• Data Big and Small: Healthcare Information Discovery. 
  Baltimore, MD - 1/6/2017
• Semantic Standards. 
  Young Harris, GA - 1/4/2017
• Crossing the Chasm of Semantic Despair: Integrating Knowledge and Data from Science and Clinical Practice. 
  Washington, DC - 1/2/2017
• TransMed: A translational data integration machine for biomedical discovery. 
  Bethesda, MD - 1/30/2016
• Phenotyping Standards including ICD11. 
  1/28/2016
• Comparability and Consistency of Clinical Data: The ICD11 initiative. 
  Johns Hopkins, Baltimore, MD - 1/27/2016
• ICD-11 and Cancer Registration. 
  Marrakech - 1/20/2016
• Informatics Standards 
  Young Harris, GA - 1/16/2016
• Overview and ICD-11 Foundation Component. 
  Tokyo, Japan - 1/14/2016
• ICD-11 Future Governance: The Medical Scientific Advisory Committee. 
  Tokyo, Japan - 1/13/2016
• Phenotyping Standards: including ICD11. 
  Washington, DC - 1/13/2016
• Data Standards, Governance and Curation: Building Blocks for Healthcare Analytics. 
  Philadelphia, PA - 1/11/2016
• From the London Bills of Mortality to ICD11. 
  Philadelphia, PA - 1/11/2016
• ICD-11: Challenges, Innovations, Opportunities. 
  Tokyo, Japan - 1/11/2016
• The Promise and Taming of Big Data: Potential Contributions of ICD11. 
  Charlotte, NC - 1/10/2016
• Big Data Coursework for Computational Medicine: Standardization and Normalization of Big Data. 
  New York, NY - 1/10/2016
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Other

• From bench to bedside: The eMERGE project and the integration of genomic data into practice. 
  Chute CG, Kullo IJ, Minnesota Physician - The Independent Medical Business Newspaper
  1/1/2013
• The Journey of Meaningful Use. 
  Chute CG, Standards Standard eNewsletter, an AMIA publication
  1/1/2010
• Conference Summary: Modeling the Medical Record at the Intersection of Information and Terminology, in Medical Records and Modeling: ANSI HISPP and CEN TC 251 Workin... 
  Chute CG (L. Campbell and C. Waegemann, Editors), AHCPR
  Rockville, MD - 1/1/1996
• Endogenous and Exogenous Estrogen, Body Size, and Smoking on Colon Cancer Risk in Women. Thesis 
  Chute CG
  Harvard School of Public Health, Boston, MA - 1/1/1990
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